| HPV 16 variants | N | T109C | A131G | G132T | C143G | G145T | C285G | T286A | A289G | T295G | T325C | C335T | T350G | A403G | A442C | Predicted substitution | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 | HPV16 Reference |  | T | A | G | C | G | C | T | A | T | T | C | T | A | A |  | |
Lineage | Sub-lineage | Class/sub-class | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
EUR | Ep | E-T350 | 3 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | Â |
E-350G | E-G350 | 16 | - | - | - | - | - | - | - | - | - | - | - | G | - | - | L83V | |
E-C442/G350 | 40 | - | - | - | - | - | - | - | - | - | - | - | G | - | C | L83V/E113D | ||
E-G350/T145 | 1 | - | - | - | - | T | - | - | - | - | - | - | G | - | - | Q14H/L83V | ||
AFR | Af1 | Af1-d/G295 | 5 | - | G | - | G | T | - | a | g | G | - | T | G | Â | - | R10G/Q14D/D64E/H78Y/L83V |
Af1-d/G295/C325 | 2 | - | G | - | G | T | - | a | g | G | c | T | G | - | - | R10G/Q14D/D64E/H78Y/L83V | ||
Af2 | Af2-a/C109/G403 | 13 | c | - | T | G | T | - | a | g | - | - | T | - | g | - | R10I/Q14D/H78Y | |
Af2-a/G285 | 1 | - | - | T | G | T | G | a | g | - | - | T | - | g | - | R10I/Q14D/A61G/H78Y | ||
Af2a/r | 10 | - | - | T | G | T | - | a | g | - | - | T | - | g | - | R10I/Q14D/H78Y | ||
NA | NA1 | NA1 | 9 | - | - | - | - | - | - | a | g | - | - | T | - | g | - | H78Y |
NA1 | 2 | - | - | - | - | - | - | a | g | - | - | T | G | - | - | H78Y/L83V | ||
NA1-b/r | 1 | - | - | - | - | T | - | a | g | - | - | T | G | - | - | Q14D/H78Y/L83V | ||
N* | Â | 13 | 7 | 24 | 31 | 33 | 1 | 43 | 43 | 7 | 2 | 43 | 67 | 33 | 40 | Â |