Table 3 Validation of putative superinfection cases
Patient | Origin/Follow-up | Sex | Risk | Sub- | Validated | Result of | Identified | Estimated |
|---|---|---|---|---|---|---|---|---|
group | types | gene | validation | mixed-up | date of | |||
sample | event | |||||||
Case1 | -/Spain | M | HET | B,* | POL | monophyletic | 10/26/2000 | |
Case2 | Spain/Spain | M | HET | B | POL ENV | monophyletic | 02/19/2004 | |
Case3 | Spain/Spain | F | HET | B,G | POL ENV | monophyletic1 | 04/19/2004 | |
Case4 | Sweden/Sweden | M | MSM | B | POL ENV | monophyletic | 05/05/2004 | |
Case5 | Eritrea/Sweden | M | NA | C | ENV | monophyletic2 | ||
Case6 | -/Belgium | M | HET | * | ENV | monophyletic | ||
Case7 | -/Italy | M | MSM | *,B | POL | monophyletic | 01/25/2006 | |
Case8 | Italy/Italy | M | VERT | B | POL ENV | cluster of closely related samples | ||
Case9 | -/Italy | M | NA | B | POL ENV | monophyletic | 19/07/1999 | |
Case10 | -/Italy | M | NA | B | POL | monophyletic | 04/20/1998 | |
Case11 | Italy/Italy | F | HET | B | POL | monophyletic | 09/10/1997 | |
Case12 | Italy/Italy | F | IVDU | B | POL | monophyletic | 11/24/1998 | |
● Case13 | -/Italy | F | HET | B | POL ENV | POL: non monophyletic ENV: non monophyletic but fails criteria (low support) | Jan 98- May 98 | |
●Case14 | -/Italy | M | IVDU | B | POL ENV | POL: non monophyletic ENV: non monophyletic but fails criteria (low support) | Nov 97- Nov 98 | |
Control1 | Spain/Spain | M | MSM | * | POL ENV | monophyletic | ||
Control2 | Spain/Spain | M | HET | B | POL ENV | monophyletic | ||
Control3 | -/Spain | M | HET | * | ENV | monophyletic | ||
Control4 | -/Belgium | M | HET | CRF 02_AG | ENV | monophyletic |