Table 2 Oligonucleotides (5'-3') used in this study
From: Association of Escherichia coli O157:H7 tirpolymorphisms with human infection
Oligonucleotide | Sequence | Orientationa | Application |
|---|---|---|---|
tir:1U19 | atg cct att ggt aat ctt g | Sense | tir 5' amplification sequencing |
tir:72U17 | aca aac cga cgg tgc ag | Sense | tir sequencing |
tir:473L17 | atg ccc agc acc acc ac | Antisense | tir sequencing |
tir:521U17 | aag ccc gcc aaa gga ta | Sense | tir RR1 sequencing |
tir:967L17 | tct tcg cct gct gct tt | Antisense | tir RR1 sequencing |
tir:1046U17 | cta aac gcc agg agg ag | Sense | tir RR2, 3, & 4 sequencing |
tir:1572L17 | ggc gta atc cac cac tt | Antisense | tir RR2, 3, & 4 sequencing |
tir:1638L16 | cgc tgg tgg gtt att c | Antisense | tir 3' amplification sequencing |
eae:16U16 | tgt tat acc cgg acc c | Sense | eae 5' amplification sequencing |
eae:135U19 | taa att ggg ttc gga ttc a | Sense | eae sequencing |
eae:382L17 | aca aga ggt gcc gaa cc | Antisense | eae sequencing |
eae:490U16 | aat tat gcg gca caa c | Sense | eae sequencing |
eae:574L18 | gtt acc agc gat acc aag | Antisense | eae sequencing |
eae:626U18 | att atg gaa cgg cag agg | Sense | eae sequencing |
eae:886L19 | ttt tga aat agt ctc gcc a | Antisense | eae sequencing |
eae:1090U17 | gat aag ctg cag tcg aa | Sense | eae sequencing |
eae:1178L18 | ttt cat tac ccg tac cat | Antisense | eae sequencing |
eae:1290U18 | atc agg cag ccg tta cga | Sense | eae sequencing |
eae:1492L19 | ttc cgc tat gct gaa tct g | Antisense | eae sequencing |
eae:1695U18 | gga taa gac ttc ggc taa | Sense | eae sequencing |
eae:1732L18 | cgt cgc ggt ata agt aat | Antisense | eae sequencing |
eae:1883U17 | cgc cag gac agg tcg tc | Sense | eae sequencing |
eae:2135L17 | att tcc cgt ggt tgc tt | Antisense | eae sequencing |
eae:2249U19 | ttg gta aca atg tca gag g | Sense | eae sequencing |
eae:2358L13 | acc acc gct tgc t | Antisense | eae sequencing |
eae:2360U17 | caa gcg gtg gtg atg gt | Sense | eae sequencing |
eae:2699L17 | tcc aga acg ctg ctc ac | Antisense | eae sequencing |
eae:2787L19 | tta ttc tac aca aac cgc a | Antisense | eae 3' amplification sequencing |