Figure 2

SNP profiles in a C. trachomatis sample processed with and without whole-genome enrichment. The plot illustrates SNP profiles in a cultured C. trachomatis sample processed with and without whole-genome enrichment compared to the GenBank reference strain isolate F/SW4 (Accession no. NC_017951.1). The two outer tracks shown in green illustrate the open reading frames (ORFs) annotated in the GenBank reference strain isolate F/SW4 with forward and reverse orientation. The red track shows the SNP differences found within coding regions between the cultured C. trachomatis sample processed without whole-genome enrichment and the reference strain. The blue track shows the SNP differences found within coding regions between the same cultured C. trachomatis sample processed with whole-genome enrichment and the reference strain. The SNPs are called at the consensus level.