Table 1 The Distribution of Spoligotype according to districts in Limpopo Province, South Africa
From: Genetic diversity and distribution of Mycobacterium tuberculosis genotypes in Limpopo, South Africa
Spoligotype family | Total isolates N = 215 (%) | DISTRICTS | ||||
|---|---|---|---|---|---|---|
Capricorn N = 101 (%) | Mopani N = 16 (%) | Sekhukhune N = 38 (%) | Vhembe N = 30 (%) | Waterberg N = 30 (%) | ||
Beijing | 32 (14.9) | 10 (9.9) | 3(18.8) | 9(23.7) | 7(23.3) | 3(10.0) |
CAS1_DELHI | 4 (1.9) | 1 (1.0) | 0(0.0) | 0(0.0) | 1(3.3) | 2 (6.7) |
S | 21(9.8) | 13(6.0) | 1(0.5) | 3(1.4) | 0(0.0) | 4(1.8) |
X1 | 7(3.2) | 6(5.9) | 0(0.0) | 1(0.5) | 0(0.0) | 0(0.0) |
T1 | 33 (15.0) | 15(7.0) | 1(0.47) | 7(3.2) | 5(2.3) | 5(2.3) |
LAM3-LAM6 | 1(0.5) | 0(0.0) | 1(6.3) | 0(0.0) | 0(0.0) | 0(0.0) |
CAS1_KILI | 3(1.4) | 1(1.0) | 1(6.3) | 0(0.0) | 0(0.0) | 1(3.3) |
LAM3 | 21(9.8) | 16(7.4) | 0(0.0) | 2(0.9) | 2(0.9) | 1(0.5) |
LAM9 | 10(4.7) | 4(1.9) | 0(0.0) | 2(0.9) | 0(0.0) | 4(1.8) |
T5 | 1(0.5) | 1(1.0) | 0(0.0) | 0(0.0) | 0(0.0) | 0(0.0) |
H3 | 31.4() | 2(0.9) | 0(0.0) | 1(0.5) | 0(0.0) | 0(0.0) |
T2 | 2(0.9) | 0(0.0) | 0(0.0) | 1(2.6) | 1(3.3) | 0(0.0) |
MANU2 | 3(1.4) | 2(2.0) | 0(0.0) | 0(0.0) | 1(3.3) | 0(0.0) |
U | 1(0.5) | 0(0.0) | 1(6.3) | 0(0.0) | 0(0.0) | 0(0.0) |
LAM11_ZWE | 7(3.3) | 3(3.0) | 0(0.0) | 0(0.0) | 4(13.3) | 0(0.0) |
LAM4 | 8(3.7) | 1(1.0) | 2(12.5) | 0(0.0) | 3(10.0) | 2(6.7) |
T2-T3 | 3(1.4) | 2(2.0) | 1(6.3) | 0(0.0) | 0(0.0) | 0(0.0) |
BEIJING-LIKE | 2(0.9) | 1(1.0) | 0(0.0) | 1(2.6) | 0(0.0) | 0(0.0) |
EAI1_SOM | 4(1.9) | 0(0.0) | 0(0.0) | 2(0.9) | 1(0.5) | 1(0.5) |
X3 | 4(1.9) | 1(1.0) | 0(0.0) | 2(5.3) | 0(0.0) | 1(3.3) |
CAS | 3(1.4) | 2(0.9) | 0(0.0) | 0(0.0) | 1(0.5) | 0(0.0) |
LAM7 | 2(0.9) | 1(0.5) | 0(0.0) | 0(0.0) | 0(0.0) | 1(0.5) |
T3 | 1(0.5) | 1(0.5) | 0(0.0) | 0(0.0) | 0(0.0) | 0(0.0) |
LAM8 | 10(4.7) | 3(1.4) | 3(1.4) | 3(1.4) | 1(1.4) | 0(0.0) |
T4 | 3(1.4) | 3(1.4) | 0(0.0) | 0(0.0) | 0(0.0) | 0(0.0) |
X2 | 1(0,5) | 1(0.5) | 0(0.5) | 0(0.5) | 0(0.0) | 0(0.0) |
EAI5 | 4(1.9) | 2(0.9) | 0(0.0) | 0(0.0) | 1(0.5) | 1(0.5) |
LAM1 | 1((0.5) | 1(0.5) | 0(0.0) | 0(0.0) | 0(0.0) | 0(0.0) |
FAMILY 33 | 4(1.9) | 1(0.5) | 2(0.9) | 1(0.5) | 0(0.0) | 0(0.0) |
EAI4 | 3(1.4) | 1(0.5) | 2(0.9) | 0(0.0) | 0(0.0) | 0(0.0) |
M. microti | 4(1.9) | 2(0.9) | 0(0.0) | 0(0.0) | 1(0.5) | 1(0.5) |