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Table 1 List of the reference and clinical strains examined by CanTub-simplex PCR

From: Validation of a simplex PCR assay enabling reliable identification of clinically relevant Candida species

 

DNA serial ID.

Strain designation number

Organism

Tm °C

Yeasts

Reference

ATCC 10231

Candida albicans

78.77 ± 0.06

1

DMC 14134

Candida albicans

78.60 ± 0.08

2

DMC 3666

Candida albicans

78.70 ± 0.11

3

DMC 40678

Candida albicans

78.43 ± 0.16

4

SZMC 22801

Candida albicans

78.57 ± 0.12

5

SZMC 22800

Candida albicans

78.77 ± 0.02

6

SZMC 1523

Candida albicans

78.69 ± 0.05

7

SZMC 1422

Candida albicans

78.67 ± 0.11

Reference

ATCC 90030

Candida glabrata

81.55 ± 0.03

8

SZMC 1353

Candida glabrata

81.44 ± 0.14

9

SZMC 1362

Candida glabrata

81.59 ± 0.12

10

SZMC 1370

Candida glabrata

81.30 ± 0.15

11

SZMC 1374

Candida glabrata

81.55 ± 0.14

Reference

ATCC 22019

Candida parapsilosis

80.16 ± 0.05

12

DMC 6378

Candida parapsilosis

80.18 ± 0.10

13

DMC 6403

Candida parapsilosis

80.26 ± 0.15

14

DMC 16879

Candida parapsilosis

80.26 ± 0.02

15

SZMC 23640

Candida parapsilosis

79.91 ± 0.02

16

SZMC 8114

Candida parapsilosis

80.18 ± 0.06

17

SZMC 1593

Candida parapsilosis

80.12 ± 0.04

Reference

ATCC 750

Candida tropicalis

78.47 ± 0.11

18

DMC 10776

Candida tropicalis

78.13 ± 0.16

19

DMC 2696

Candida tropicalis

78.36 ± 0.02

20

DMC 3403

Candida tropicalis

78.25 ± 0.14

21

SZMC 1351

Candida tropicalis

78.20 ± 0.10

22

SZMC 1364

Candida tropicalis

78.17 ± 0.07

23

SZMC 1366

Candida tropicalis

78.33 ± 0.06

24

SZMC 1368

Candida tropicalis

78.13 ± 0.11

Reference

ATCC 6258

Candida krusei

79.31 ± 0.05

25

DMC 26513

Candida krusei

79.27 ± 0.01

26

DMC 23697

Candida krusei

79.34 ± 0.06

27

DMC 22910

Candida krusei

79.39 ± 0.07

28

SZMC 1352

Candida krusei

79.20 ± 0.03

29

SZMC 1414

Candida krusei

79.32 ± 0.05

30

SZMC 1447

Candida krusei

79.24 ± 0.12

31

SZMC 1450

Candida guilliermondii

81.09 ± 0.10

32

SZMC 0808

Candida guilliermondii

81.01 ± 0.06

33

SZMC 1536

Candida guilliermondii

81.08 ± 0.12

34

SZMC 1357

Candida guilliermondii

80.84 ± 0.11

35

SZMC 1469

Candida dubliniensis

77.91 ± 0.05

36

SZMC 1470

Candida dubliniensis

77.75 ± 0.01

37

SZMC 1471

Candida dubliniensis

77.62 ± 0.03

38

SZMC 1472

Candida dubliniensis

77.62 ± 0.08

Moulds

Reference

FGSC A1156

Aspergillus terreus

–

39

SZMC 22546

Aspergillus terreus

–

40

SZMC 22547

Aspergillus terreus

–

41

SZMC 22548

Aspergillus terreus

–

42

SZMC 22549

Aspergillus terreus

–

Reference

CBS 101355/AF 293

Aspergillus fumigatus

–

43

SZMC 2504

Aspergillus fumigatus

–

44

SZMC 2486

Aspergillus fumigatus

–

45

SZMC 22550

Aspergillus fumigatus

–

46

SZMC 22551

Aspergillus fumigatus

–

47

SZMC 22552

Aspergillus fumigatus

–

48

SZMC 22553

Aspergillus fumigatus

–

49

SZMC 22554

Aspergillus fumigatus

–

Reference

CBS 117885

Aspergillus lentulus

–

50

SZMC 3123

Aspergillus lentulus

–

51

SZMC 20911

Aspergillus lentulus

–

Reference

NRRL 11611

Aspergillus flavus

86.36

52

SZMC 22583

Aspergillus flavus

–

53

SZMC 22582

Aspergillus flavus

–

54

SZMC 22581

Aspergillus flavus

86.61

55

SZMC 22580

Aspergillus flavus

86.34

56

SZMC 22578

Aspergillus flavus

86.39

57

SZMC 22577

Aspergillus flavus

–

58

SZMC 22575

Aspergillus flavus

86.38

Reference

CBS 113.46

Aspergillus niger

86.57

59

SZMC 3119

Aspergillus niger

86.75

60

SZMC 3108

Aspergillus niger

–

Reference

CBS 134.48

Aspergillus tubingensis

–

61

SZMC 3127

Aspergillus tubingensis

–

62

SZMC 2040

Aspergillus udagawae

–

63

SZMC 2041

Aspergillus udagawae

–

64

SZMC 21694

Aspergillus viridinutans

–

65

SZMC 13F

Fusarium sacchari

–

66

SZMC 90/11

Fusarium napiforme

–

67

SZMC 173/11

Fusarium delphinoides

–

68

SZMC 394/11

Fusarium oxisporum

–

69

SZMC FSU9682

Lichtemia corymbifera

–

70

SZMC RH59

Rhizopus oryzae

43.13, 77.38

71

SZMC Sce

Scedosporium aurantiacum

37.54, 75.73

Gram-positive bacteria

Reference

ATCC 25923

Staphylococcus aureus

–

72

SZMC 14529

Staphylococcus aureus

–

73

SZMC 14530

Staphylococcus aureus

–

74

SZMC 14532

Staphylococcus aureus

–

Reference

ATCC 29213

Staphylococcus aureus

–

Reference

ATCC 43300

Staphylococcus aureus

–

75

SZMC 14531

Staphylococcus epidermidis

–

Reference

ATCC 29212

Enterococcus faecalis

–

Reference

ATCC 8043

Enterococcus hirae

–

76

SZMC 14538

Enterococcus faecalis

–

Gram-negative bacteria

Reference

ATCC 13048

Enterobacter aerogenes

–

77

SZMC 6222E

Enterobacter gergoviae

–

78

SZMC 6223

Enterobacter gergoviae

–

79

SZMC 6224

Enterobacter gergoviae

–

80

SZMC 21890

Enterobacter cloacea

–

81

SZMC 21892

Enterobacter cloacea

–

  1. Clinical isolates are from the Szeged Microbiology Collection (SZMC) and from the Debrecen Microbiology Collection (DMC). Reference strains are from American Stock Centre (ATCC), Centraalbureau voor Schimmelcultures, Fungal and Yeast Cultures (CBS), Northern Regional Research Laboratories (NRRL), Fungal Genetics Stock Centre (FGSC)