Primer ID | Sequence (5′~ 3′) | Product | Length (bp) | Reference |
---|---|---|---|---|
S11 | AGGCTCCTGGCRTYACTACTG | F1 | 1163 bp | 2 |
S12 | GCCYTGGCGAATGCTGTG | |||
A11 | GGCCRGGAATGTAATCACG | |||
A12 | GCGGCACTGGGCRTAAAACT | |||
HEV-A1 | AAAGGAATGAAGAGGCTGGAG | F2 | 1520 bp | This study |
HEV-A3 | GAAAAGTCTGGCCGTGATTAC | |||
HEV-B2 | TCCTCAGTAATAGTAAGGGC | |||
HEV-B4 | AGGTCGATGGTTACGTTCCC | |||
HEV-C1 | TGCCTGTTGGGCTGAGTTTTGATG | F3 | 1394 bp | This study |
HEV-C3 | GCCAGCCATAGCTTGGTTTGAAG | |||
D1R | AAGGTCTTGCTCCACGCAGATATC | |||
D3R | CTGGAAGAATGTTATACGAGACAC | |||
D2F | CTTGTGGAGGCCATGGTGGAGAA | F4 | 1243 bp | This study |
D4F | ATGGTGGAGAAAGGCCAGGAT | |||
ER1 | TCACGCCAAGCGGAGCCGAGT | |||
ER2 | GAAGGGGTTGGTTGGATGAAT | |||
EF1 | TTTCTGGGGTGACCGGGTTGATT | F5 | 1791 bp | This study |
EF2 | CTATATTCATCCAACCAACCCCT | |||
HEV31 | CAGGGAGCGCGGAACGCAGAAAAGA | |||
HEV32 | TCAATACTCCCGAGTTTTACCCACC | |||
5' Race-A1 | GCAGTGARTARAGYGCAAYCCCHGTCT | 5' RACE | 501 bp | 2 |
5' Race-A2 | CGRGCCATYGCCTCNGCRACATC | |||
3' Race-S1 | ACYACNACTGCTGCYACACGBTTYATGA | 3' RACR | 936 bp | 2 |
3' Race-S2 | CTYTGTTYAAYCTTGCTGAYACGCTKCTC | |||
T7P1 | GCCTAGCTAGCTAGTCTAGATAATACGACTCACTATA | 5′ terminal | – | This study |
PAP2 | CGGTCGACCGATCGATTTTTTTTTTTTTTTTTTTTTTTTTCAGGGAGCGC | 3′ terminal | – | This study |
HEV1 | AATTATGCC(T)CAGTAC(T)CGG(A)GTTG | Positive strand of HEV RNA | 348 bp | [23] |
HEV2 | CCCTTA(G)TCC(T)TGCTGA(C)GCATTCTC | |||
HEV3 | GTT(A)ATGCTT(C)TGCATA(T)CATGGCT | |||
HEV4 | AGCCGACGAAATCAATTCTGTC | |||
HEV6 | AGCTCCTGTACCTGATGATGTTGACTC | Negative strand of HEV RNA | 266 bp | [24] |
HEV7 | CTACAGAGCGCCAGCCTTGATTGC | |||
HEV8 | GCTCACGTCATCTGTCGCTGCTGG | |||
HEV9 | GGGCTGAACCAAAATCCTGACATC | |||
WHO-F | GGTGGTTTCTGGGGTGAC | qRT-PCR | 70 bp | [25] |
WHO-R | AGGGGTTGGTTGGATGAA |