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Table 1 Primers sequence

From: Successful infection of BALB/c mice by a swine hepatitis E virus clone constructed with reverse genetics

Primer ID

Sequence (5′~ 3′)

Product

Length (bp)

Reference

S11

AGGCTCCTGGCRTYACTACTG

F1

1163 bp

2

S12

GCCYTGGCGAATGCTGTG

A11

GGCCRGGAATGTAATCACG

A12

GCGGCACTGGGCRTAAAACT

HEV-A1

AAAGGAATGAAGAGGCTGGAG

F2

1520 bp

This study

HEV-A3

GAAAAGTCTGGCCGTGATTAC

HEV-B2

TCCTCAGTAATAGTAAGGGC

HEV-B4

AGGTCGATGGTTACGTTCCC

HEV-C1

TGCCTGTTGGGCTGAGTTTTGATG

F3

1394 bp

This study

HEV-C3

GCCAGCCATAGCTTGGTTTGAAG

D1R

AAGGTCTTGCTCCACGCAGATATC

D3R

CTGGAAGAATGTTATACGAGACAC

D2F

CTTGTGGAGGCCATGGTGGAGAA

F4

1243 bp

This study

D4F

ATGGTGGAGAAAGGCCAGGAT

ER1

TCACGCCAAGCGGAGCCGAGT

ER2

GAAGGGGTTGGTTGGATGAAT

EF1

TTTCTGGGGTGACCGGGTTGATT

F5

1791 bp

This study

EF2

CTATATTCATCCAACCAACCCCT

HEV31

CAGGGAGCGCGGAACGCAGAAAAGA

HEV32

TCAATACTCCCGAGTTTTACCCACC

5' Race-A1

GCAGTGARTARAGYGCAAYCCCHGTCT

5' RACE

501 bp

2

5' Race-A2

CGRGCCATYGCCTCNGCRACATC

3' Race-S1

ACYACNACTGCTGCYACACGBTTYATGA

3' RACR

936 bp

2

3' Race-S2

CTYTGTTYAAYCTTGCTGAYACGCTKCTC

T7P1

GCCTAGCTAGCTAGTCTAGATAATACGACTCACTATA

5′ terminal

–

This study

PAP2

CGGTCGACCGATCGATTTTTTTTTTTTTTTTTTTTTTTTTCAGGGAGCGC

3′ terminal

–

This study

HEV1

AATTATGCC(T)CAGTAC(T)CGG(A)GTTG

Positive strand of HEV RNA

348 bp

[23]

HEV2

CCCTTA(G)TCC(T)TGCTGA(C)GCATTCTC

HEV3

GTT(A)ATGCTT(C)TGCATA(T)CATGGCT

HEV4

AGCCGACGAAATCAATTCTGTC

HEV6

AGCTCCTGTACCTGATGATGTTGACTC

Negative strand of HEV RNA

266 bp

[24]

HEV7

CTACAGAGCGCCAGCCTTGATTGC

HEV8

GCTCACGTCATCTGTCGCTGCTGG

HEV9

GGGCTGAACCAAAATCCTGACATC

WHO-F

GGTGGTTTCTGGGGTGAC

qRT-PCR

70 bp

[25]

WHO-R

AGGGGTTGGTTGGATGAA