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Table 3 Bacterial co-infection reported among severe cases of A(H1N1)pdm09 admitted in ICUs (n = 16)

From: The role of pneumonia and secondary bacterial infection in fatal and serious outcomes of pandemic influenza a(H1N1)pdm09

Author and year

Study type

Study population

Case severity

Antiviralsa

n/N (%) any

n/N (%) 48 h

Antibiotics†

n/N (%) pre

n/N (%) on

n/N (%) during admission

Any positive bacterial growth

Number (%) patients with S.pneumoniae and site of isolation

Number (%) with bacterial pneumonia

- Method

- Diff/no diff

ICU - ECMO

Mechanical Ventilation

Deaths

Miller (2010) [36]

Utah, USA

5/09–6/09

Adults(16+)

Multicentre (4) case series (+ comparison with local resident population) / Adult (> 15 y) ICU admissions

N = 47

47/47 (100)

- 0

13/47 (27.7)

IV = 11/47 (84.6)

8/47 (14)

47/47 (100.0)

- 45/47 (95.7)

44/47 (93.6)

- NS

6/47 (13)

0/47 (0) BC

0/47 (0) ET aspirate

0/47 (0) SC

0/47 (0) BAL fluid

43/47(91.5)

- CXR

- No diff

Rello [29] (2009)

Spain

6/09–7/09

Adults

Multicentre (20) case series (retrospective) / ICU adult admissions with ARF

N = 32

32/32 (100)

- 0

24/32 (75.0)

- IV = 22/32 (91.7)

- NIV = 2/32 (8.3)

8/32 (25)

32/32 (100.0)

-NS

32/32 (100.0)

1/32 (3.1)

Secondary superinfection with Pseudomonas

aeruginosa were also documented in three patients (9.3).

1/32 (3.1) aspirate

0/32 (0) BC

1/32 (3.1)

respiratory culture

ANZ ECMO [34] (2009)

Australia and New Zealand

6/09–8/09

All ages

Multicentre (15) cohort study (retrospective) / All ages ICU admission with ARDS treated with ECMO

Includes probable casesa

N = 68

68/68 (100)

- 68/68 (100)

68/68 (100)

14/68 (20.6)

64/68 (94.1)

- NS

NR

19/68 (28)

10/68 (14.7) [respiratory secretion/BC]

66/68 (97.1)

CXR/CT

No diff

Estenssoro (2010) [5]

Argentina

6/09–9/09

Adults(15+)

Multicentre (35) inception cohort study (prospective & retrospective) / adult (≥ 15 years) ICU admissions with ILI & ARF requiring MV

Includes probable casesa

N = 337

337/337 (100)

337/337 (100)

NIV = 64/337 (19.0)

156/337 (46.3)

328/336 (98)

- NS

337/337 (100)

- NS

28/337 (8.3)

28 /337 [NS]

8.3

80/337 (23.7)

CXR/CT

Diff

Nin [31] (2011)

Chile, Uruguay

6/09–9/09

Multicenter (10) case series (> 18 yrs) (retrospective and prospective) / Respiratory failure requiring ICU mechanical ventilation **

(confirmed = 77/ 96)

Includes probable casesa

N = 96

96/96 (100)

13/96 (13.5)

96/96 (100)

NIV = 10/96 (10.4)

IV = 86/96 (89.6)

Prone ventilation = 44 /96 (45.8)HFOV = 10/96 (10.4)

48/96 (50)

84/96 (87.5)

- NS

91/96 (94.8)

- NS

8/96 (8)

NR

32/96 (33.3, 8 within first week of admission)

- Purulent sputum, significant growth of pathogen in ET aspirate

- diff

Koegelenberg (2010) [30]

South Africa

8/09–9/09

Adults(18+)

Single-centre case series (prospective)/Adult (> = 18 y) ICU admissions with ARF requiring MV

N = 19

19/19 (100)

- NR

19/19 (100)

- NIV = 2/19 (10.5)

13/19 (68.4)

19/19 (100)

- 14 (73.7)

NR

0/19 (19)

0/19 (0) BC

0/19 (0) ET aspirates

0/19 (0) other NS

0/19 (0)

(10 cases of nosocomial infection (> = 48 h admission)

- CXR

Martin-Loeches [28] (2010)

Spain

1st case - 12/09

Adults (16+)

Multicentre (148) case series (prospective) /Adult (> = 15 y) ICU admissions with ARF

N = 645

645/645 (100)

NR

- IV = 389/645 (60.3)

112/645 (17.4)

620/645 (96.1)

- NS

645/645 (100)

- NS

113/645 (17.5)

62 /645 (9.6)

site NS

Cultures routinely every day

113/645 (17.5)

- CXR + pos culture

- diff

Rice [39] (2012)

US

4/09–4/10

Multicenter (35) case series (retrospective and prospective) / Critically ill cases (> 13 years) admitted to adult ICU’s (Confirmed = 424/683, 62%)

Includes probable casesa

N = 683

683/683 (100)

231/683 (33.8)

- IV = 175/683 (75.8)

- NIV = 56/683 (24.2)

309/683 (45.2)

683/683 (100)

-NS

NR

Total 154/683 (22.5)

Sputum specimen

84/683 (12.3)

Bacteraemia 50 (7.3)

Both 20 (2.9)

10/683 (1.5) BC

207/683 (30.3) clinical coinfection, non-diff

CDC [27]

Patients at a tertiary care hospital in Michigan

N = 10

10/10 (100)

10/10 (100)

3/10 (30%)

10/10 (100)

10/10 (100)

NR

NR

NR

Kim [32]

ICU in 28 Hospitals in SK

245

245/245 (100)

162/245 (100)

99/245 (40.4)

103/245 (42)

243/245 (99.2)

91/245 (37.1)

0/245 (0)

91/245 (37.1)

Malato [35]

ICU in one hosiptal

24

24/24 (100)

6/24 (25)

4/24 (16.7)

20/20 (100)

NR

6/24 (25)

0/24 (0)

6/24 (25)

Kumar [33] (2009)

Canada

4/09–8/09

All ages

Multicentre (38) cohort study (prospective & retrospective) /All age critically ill patients = ICU & requiring MV or IV medication or ≥ 60% inspired O2 fraction

Includes probable casesa

N = 168

168/168 (100)

- 7/168 (4.2)

136/168 (81.0)

- IV = 128/168 (94.1)

- HFOV = 20/168 (14.7)

29/168 (17.3)

NR

NR

 

5/168 (2.9) site NS

54/168 (32.1) possible at presentation; 41/168 (24.4) clinically dx cases following ICU admission

- CXR + culture /clinical opinion

Roch [26]

ARDS cases in ICU

N = 18

18/18 (100)

10/18 (100)

10/10 (100)

NR

NR

0/18 (0)

0/18 (0)

0/18 (0)

Lucker [37]

One hospital ICU, medical charts reviewed

14

14/14 (100)

10/14 (71.4)

2/14 (14.3)

14/14 (100)

13/14 (92.9)

6/14 (42.8)

Of ICU cases

0/14 (0)

6/14 (42.9)

Leen [38]

22 bed ICU in one hospital

N = 31

31/31 (100)

 

3/31 (10)

NR

NR

NR

NR

10/31 (32.2)

Method not mentioned

Torres [40]

Hospital in Chile. Includes probable casesa

N = 11

11/11 (100)

11/11 (100)

0/11 (0)

11/11 (100)

7/11 (63.6)

1/11 (0.9)

Group A Streptococcus

Site NR

0/11 (0)

6/11 (54.5)

Non Diff

  1. Antibiotics: time started – “Pre” = started prior admission, “On” = started on admission, “During” = started during admission
  2. Diff Differentiated between bacterial pneumonia, viral pneumonia and ARDS
  3. No diff Did not differentiate between aetiology of abnormal chest imaging
  4. aH1N1 testing = 53 (77.9) PCR/viral culture, 8 (11.8) serologically diagnosed but flu A not typed [34]; probable cases not defined [31]; Probable: Flu A, not otherwise subtyped [39]