Skip to main content

Table 2 Species assignments of Tunisian PNTM isolates according to % similarity with rpoB, 16S rRNA, hsp65, and sodA gene sequences

From: Nontuberculous mycobacteria isolated from specimens of pulmonary tuberculosis suspects, Northern Tunisia: 2002–2016

Reference

Species identification based on % similarity

rpoB

16S rRNA gene

hsp65

sodA

TNTM1

M. kansasii (100%)

M. kansasii (100%)

M. kansasii (100%)

M. kansasii (100%)

TNTM2

M. kansasii (100%)

M. kansasii (100%)

M. kansasii (100%)

M. kansasii (100%)

TNTM3

M. kansasii (100%)

M. kansasii (100%)

M. kansasii (100%)

M. kansasii (100%)

TNTM4

M. kansasii (100%)

M. kansasii (100%)

M. kansasii (100%)

M. kansasii (100%)

TNTM5

M. kansasii (100%)

M. kansasii (100%)

M. kansasii (100%)

M. kansasii (100%)

TNTM6

M. kansasii (100%)

M. kansasii (100%)

M. kansasii (100%)

M. kansasii (100%)

TNTM7

M. kansasii (100%)

M. kansasii (100%)

M. kansasii (100%)

M. kansasii (100%)

TNTM8

M. gordonae (100%)

M. gordonae (100%)

M. gordonae (97.64%)

M. gordonae (99.76%)

TNTM9

M. gordonae (100%)

M. gordonae (100%)

M. gordonae (100%)

M. gordonae (100%)

TNTM10

M. fortuitum (100%)

M. fortuitum (100%)

M. fortuitum (100%)

M.fortuitum (99.76%)

TNTM11

M. fortuitum (100%)

M. fortuitum (100%)

M. fortuitum (100%)

M. fortuitum (99.76%)

TNTM12

M. fortuitum (100%)

M. fortuitum (100%)

M. fortuitum (100%)

M. fortuitum (99.76%)

TNTM13

M.fortuitum (100%)

M. fortuitum (100%)

M. fortuitum (100%)

M. fortuitum (99.76%

TNTM14

M.fortuitum (100%)

M. fortuitum (100%)

M. fortuitum 100%

M. fortuitum (99.76%)

TNTM15

M. peregrinum (100%)

M. peregrinum (100%)

M.peregrinum (100%)

M. peregrinum (100%)

TNTM16

M. porcinum (100%)

M.porcinum (100%)

M. porcinum (99.71%)

M. porcinum (100%)

TNTM17

M. novocastrense (99.99%)

M. novocastrense (100%)

M. novocastrense (100%)

M. novocastrense (100%)

TNTM18

M. novocastrense (100%)

M. novocastrense (99.73%)

M. novocastrense (100%)

M. novocastrense (100%)

TNTM19

M. novocastrense (100%)

M. novocastrense (99.73%)

M. novocastrense (100%)

M. novocastrense (100%)

TNTM20

M. novocastrense (99.85%)

M. novocastrense (100%)

M .novocastrense (100%)

M. novocastrense (100%)

TNTM21

M. novocastrense (99.85%)

M. novocastrense (99.73%)

M. novocastrense (100%)

M. novocastrense (100%)

TNTM22

M. flavescens (99.98%)

M. flavescens (99.74%)

M. flavescens (99.41%)

M. flavescens (100%)

TNTM23

M. gadium (100%)

M. gadium (100%)

M. gadium (100%)

M. gadium (100%)

TNTM24

M. gadium (98.45%)

M. gadium (100%)

M. gadium (98.82%)

M. gadium (100%)

TNTM25

M. chelonae (100%)

M. chelonae (100%)

M. chelonae 100%

M. chelonae (100%)

TNTM26

M. chelonae (100%)

M. chelonae (100%)

M. chelonae (100%)

M. chelonae (100%)

TNTM27

M. chelonae (100%)

M. chelonae (100%)

M. chelonae (100%)

M. chelonae (100%)

TNTM28

M. peregrinum (94.06%)

M. fortuitum complex (100%)

M. sp H12O-99,072 (96.76%)

M. fortuitum (92.95%)

TNTM29

rUMS (90.03%)

M. sp GR2001–270 (100%)

M. sp GR 2001–270 (97.64%)

M. aurum (90.10%)

TNTM30

rUMS (92.16%)

M. sp G1368 (99.86%)

M. sp G1368 (96%)

M. abscessus (97.80%)