A retrospective genomic analysis of drug-resistant strains of M. tuberculosis in a high-burden setting, with an emphasis on comparative diagnostics and reactivation and reinfection status

Table 2 Drug resistance phenotype/genotype mismatches

Patient ID	Sample ID	pDST Profile	WGVA Prediction	Has Low Frequency Variation	Mean Coverage < 100 Reads
552	SRR3743495	MDR	Sens	TRUE
725	SRR5153884	MDR	Sens
740	SRR5153913	MDR	Sens	TRUE
764	SRR3743493	Mono^a	Sens	TRUE
773	SRR3743482	Mono^a	Sens	TRUE
1242	SRR5153868	Sens	rpsL K43R streptomycin resistant
1247	SRR5153880	Mono^a	Sens
1247	SRR5153881	Mono^a	Sens
1248	SRR5153901	Sens	gyrA A90V fluoroquinolone resistant
1259	SRR3743371	MDR	Sens		TRUE
1612	SRR6807669	Mono^a	Sens		TRUE
1612	SRR6807670	Mono^a	Sens		TRUE

ISSN: 1471-2334