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Table 1 Summary of MinION data from all reference samples sequenced with name, subtype and barcode. Mean coverage, mapped reads and number of nucleotide differences are shown for each individual segment. The consensus identity is calculated for all segments in %

From: Rapid multiplex MinION nanopore sequencing workflow for Influenza A viruses

Barcode

Sample

Subtype

 

PB2

PB1

PA

HA

NA

NP

MP

NS

Sum

Consensus identity %

1

R30–06

H1N1

Mean Coverage

749.9

188.3

700.9

2771.9

8756.7

7987.3

13,551.5

11,637.7

5793.025

99.98528113

Mapped Reads

8102

1131

4059

8207

22,156

20,995

31,635

30,095

126,380

Nucleotide Differences

   

1

1

   

2

2

R3111–07

H2N9

Mean Coverage

2250.2

1360.5

1001

4396.1

626.7

4582.6

8212.6

7477

3738.3375

99.99264057

Mapped Reads

32,171

11,283

7372

11,560

2390

10,367

18,613

18,298

112,054

Nucleotide Differences

   

1

    

1

3

R2555–06

H3N1

Mean Coverage

6373.3

2200.9

2080.6

929.1

1968

3874.8

5749.1

5016.4

3524.025

99.98528113

Mapped Reads

40,737

14,924

14,166

4074

6248

9628

13,859

8970

112,606

Nucleotide Differences

 

1

  

1

   

2

4

HAIV-81

H4N6

Mean Coverage

1462

3401.4

792.2

4161.2

8039.7

11,356.3

14,790.1

9955.9

6744.85

99.98528113

Mapped Reads

18,920

20,238

6874

11,778

20,138

27,900

35,597

23,680

165,125

Nucleotide Differences

1

  

1

    

2

5

R1612–08

H5N3

Mean Coverage

5033.4

3013.7

5260.7

1441.3

3776.2

1802.1

6314.7

5898.6

4067.5875

99.96320283

Mapped Reads

35,383

19,354

31,659

8876

10,321

4821

14,220

12,908

137,542

Nucleotide Differences

1

1

 

2

1

   

5

6

R617–07

H6N2

Mean Coverage

3933.5

2889.7

2995.6

4024

3403.6

3564.3

9820.9

5480.4

4514

99.99264057

Mapped Reads

29,256

21,688

23,359

13,971

9179

8292

22,581

13,515

141,841

Nucleotide Differences

   

1

    

1

7

R11–01

H7N7

Mean Coverage

5558.2

1201

1696.6

3737.4

3467.6

6623.9

7390.9

6832.7

4563.5375

99.98528113

Mapped Reads

46,729

12,888

17,912

15,132

8502

16,267

18,781

16,333

152,544

Nucleotide Differences

 

1

1

     

2

8

R249–08

H9N2

Mean Coverage

4445.5

3087.6

2260.4

1729.2

2652.5

2341.6

5403.8

6044.2

3495.6

99.98528113

Mapped Reads

32,149

20,998

14,076

6316

7275

6366

12,914

13,244

113,338

Nucleotide Differences

  

1

1

    

2

9

WV1677–03

H10N4

Mean Coverage

4296.7

1296.4

2896.6

3175.4

2728

3976.2

7689.3

5656

3964.325

99.9779217

Mapped Reads

41,559

12,764

26,781

9445

8429

10,422

17,043

13,420

139,863

Nucleotide Differences

  

2

 

1

   

3

10

R2675–06

H11N6

Mean Coverage

924.2

912.9

1378.1

1499.1

2260.8

4951.9

4345.1

3944

2527.0125

99.99264057

Mapped Reads

14,361

12,470

13,834

5702

5402

12,233

10,004

9893

83,899

Nucleotide Differences

1

       

1

11

R2613–06

H13N8

Mean Coverage

866.9

1040.9

1199.3

6152

5035.8

10,790.8

19,984.4

16,654.6

7715.5875

99.9779217

Mapped Reads

9250

10,656

10,600

19,030

14,503

26,581

48,937

44,445

184,002

Nucleotide Differences

1

1

  

1

   

3

12

Se-99

H16N3

Mean Coverage

9922

426.7

599.1

115.8

2673.5

2096

5058.4

5190.9

3260.3

99.96320283

Mapped Reads

3843

2695

5041

393

11,992

5296

12,593

11,951

53,804

Nucleotide Differences

1

1

 

1

2

   

5