From: Application of whole-genome sequencing in a case study of renal tuberculosis in a child
Mycobacterium tuberculosis isolates | ||||
---|---|---|---|---|
Father | Child | |||
Isolation source | Sputum | Urine | Urine | Bronchial aspirate |
Isolation date | February 4, 2004 | September 5, 2016 | September 6, 2016 | September 9, 2016 |
Genome coverage (%)a | 98.28 | 99.13 | 98.22 | 98.38 |
Average read length (bp) | 213 | 173 | 205 | 188 |
Mean base quality | 31.1 | 30.7 | 30.6 | 30.7 |
Mean depth | 40.4 | 61.5 | 40.3 | 62.8 |