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Table 2 Primers used for phylogenetic of uropathogenic Escherichia coli [23]

From: Distribution of virulence genes and phylogenetics of uropathogenic Escherichia coli among urinary tract infection patients in Addis Ababa, Ethiopia

Primer Name

Gene Target

Nucleotide Sequence

PCR Product (bp)

chuA.1b

chuA

5′-ATGGTACCGGACGAACCAAC-3′

288

chuA.2

 

5′-TGCCGCCACTACCAAAGACA-3′

yjaA.1b

yjaA

5′-CAAACGTGAAGTGTCAGGAG-3′

211

yjaA.2b

 

5′-AATGCGTTCCTCAACCTGTG-3′

TspE4C2.1b

TspE4.C2

5′-CACTATTCGTAAGGTCATCC-3′

152

TspE4C2.2b

 

5′-AGTTTATCGCTGCGGGTCGC-3′

AceK.f

arpA

5′-AACGCTATTCGCCAGCTTGC-3’

400

ArpA1.r

 

5′-TCTCCCCATACCGTACGCTA-3’