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Table 2 Experimentally Mapped Peptides and Computationally Predicted Epitopes

From: Computational MHC-I epitope predictor identifies 95% of experimentally mapped HIV-1 clade A and D epitopes in a Ugandan cohort

ID

Participant’s HLA Types

Hit No

Screening Peptide

Screening Peptide HIV-1 Clade

NetMHCpan4.0 9-mer Epitope Prediction

NetMHCpan4.0 9-mer HLA Prediction

NetMHCpan4.0% Rank

MHCflurry 9-mer Epitope prediction

MHCflurry 9-mer HLA prediction

MHCflurry affinity (μm)

NetCTL 9-mer Epitope prediction

E91

A*02:01

1

FITKGLGISYGRKKRRQR

D

GLGISYGRK

A*0301

0.50

GLGISYGRK

A*0201

0.47

 

A*03:01

2

HPKVSSEVHIPLGDARLV

A1

IPLGDARLV

B*53:01

0.70

IPLGDARLV

A*0302

24.63

 

B*53:01

 

HPKVSSEVHIPLGDARLV

A1

KVSSEVHIP

B*58:02

0.60

KVSSEVHIP

B*53:01

26.18

 

B*58:02

 

HPKVSSEVHIPLGDARLV

A1

SSEVHIPLG

B*58:02

0.60

    

Cw*04:01

 

HPKVSSEVHIPLGDARLV

A1

VSSEVHIPL

Cw*04:01

0.90

VSSEVHIPL

Cw*04:01

18.48

 

Cw*06:02

 

HPKVSSEVHIPLGDARLV

A1

HPKVSSEVH

B*53:01

1.20

HPKVSSEVH

Cw*06:02

28.58

 

E92

A*02:01

3

RKQNPEIVIYQYMDDLYV

D

YQYMDDLYV

A*02:01

0.15

YQYMDDLYV

A*02:01

0.25

 

A*30:02

 

RKQNPEIVIYQYMDDLYV

D

NPEIVIYQY

B*44:03

0.60

NPEIVIYQY

A*30:02

4.94

 

B*44:03

 

RKQNPEIVIYQYMDDLYV

D

YQYMDDLYV

A*02:01

1.80

YQYMDDLYV

B*44:03

8.44

 

B*14:02

 

RKQNPEIVIYQYMDDLYV

D

YQYMDDLYV

Cw*04:01

0.90

YQYMDDLYV

Cw*04:01

1.52

 

Cw*04:01

 

RKQNPEIVIYQYMDDLYV

D

YQYMDDLYV

Cw*08:02

1.20

YQYMDDLYV

Cw*08:02

13.26

 

Cw*08:02

 

RKQNPEIVIYQYMDDLYV

D

VIYQYMDDL

A*30:02

0.60

VIYQYMDDL

A*30:02

2.52

 
 

4

ELNKRTQDFWEVQLGIPH

A1

TQDFWEVQL

Cw*08:02

0.40

YQYMDDLYV

Cw*08:02

3.09

 
  

ELNKRTQDFWEVQLGIPH

A1

TQDFWEVQL

A*02:01

0.03

TQDFWEVQL

A*02:01

19.72

 
  

ELNKRTQDFWEVQLGIPH

A1

TQDFWEVQL

Cw*08:02

1.50

TQDFWEVQL

Cw*08:02

3.09

 
  

ELNKRTQDFWEVQLGIPH

A1

ELNKRTQDF

B*44:03

0.60

ELNKRTQDF

B*44:03

26.56

 
 

5

NDIQKLVGKLNWASQIYP

D

KLNWASQIY

A*30:02

0.50

KLNWASQIY

A*30:02

0.02

 
  

NDIQKLVGKLNWASQIYP

D

KLVGKLNWA

A*02:01

0.47

KLVGKLNWA

A*02:01

0.32

 
  

NDIQKLVGKLNWASQIYP

D

KLNWASQIY

Cw*04:01

1.80

KLNWASQIY

Cw*04:01

2.34

 
 

6

PAIQTGSEELRSLYNTVA

D

GSEELRSLY

A*30:02

0.40

GSEELRSLY

A*30:02

0.12

 
  

PAIQTGSEELRSLYNTVA

D

SEELRSLY

B*44:03

0.50

SEELRSLY

B*44:03

16.25

 
 

7

PYNTPIFAIKKKDSTKWR

A1

PYNTPIFAI

Cw*04:01

1.14

PYNTPIFAI

Cw*04:01

32.80

 
 

8

GANNSHNETFRPGGGDMR

D

TFRPGGGDM

Cw*04:01

1.60

TFRPGGGDM

Cw*04:01

1.15

 
 

9

GMDGPKVKQWPLTEEKIK

A1

MDGPKVKQW

B*44:03

0.50

MDGPKVKQW

B*44:03

1.37

 
 

10

PLTSLKSLFGNDPLSQ

D

KSLFGNDPL

A*02:01

1.40

KSLFGNDPL

A*02:01

31.04

 
  

PLTSLKSLFGNDPLSQ

D

KSLFGNDPL

Cw*08:02

1.20

    
  

FKGPRKIIKCFNCGKEGHI

D

       
 

11

HERIEVKDTKEALEKI

D

EVKDTKEAL

B*14:02

1.40

    
  

HERIEVKDTKEALEKI

D

IEVKDTKEA

B*44:03

1.99

IEVKDTKEA

B*44:03

13.12

 

E94

A*34:02

12

KIEEIQNKSKQKTQQAAA

A1

EIQNKSKQK

A*34:02

1.03

EIQNKSKQK

B*44:03

35.84

 

A*74:01

13

NHPSCVWLEAQEEEEVGF

A1

LEAQEEEEV

B*44:15

1.70

LEAQEEEEV

B*44:04

12.09

LEAQEEEEV

B*44:03

14

HQDPIPKQPSSQPRGD

D

HQDPIPKQP

Cw*04:01

0.60

HQDPIPKQP

Cw*04:01

7.89

 

B*58:02

      

LEAQEEEEV

Cw*06:02

8.72

 

Cw*04:01

          

Cw*06:02

          

E95

A*23:01

15

VAVHVASGYIEAEVIPA

A1

VAVHVASGY

Cw*16:01

1.50

VAVHVASGY

A*23:01

30.27

 

A*74:01

17

KRWIILGLNKIVRMYSPV

A1

WIILGLNKI

A*23:01

0.60

WIILGLNKI

A*23:01

6.99

 

B*44:03

16

KRWIILGLNKIVRMYSPV

A1

IILGLNKIV

A*74:01

0.60

IILGLNKIV

B*44:03

28.76

 

B*15:10

17

NMMLNIVGGHQAAMQMLK

A1

HQAAMQMLK

B*15:10

0.17

   

HQAAMQMLK

Cw*04:01

 

NMMLNIVGGHQAAMQMLK

A1

HQAAMQMLK

A*74:01

0.90

    

Cw*16:01

 

NMMLNIVGGHQAAMQMLK

A1

HQAAMQMLK

Cw*04:01

1.30

HQAAMQMLK

Cw*04:01

26.63

 
 

18

KNWMTETLLVQNANPDCK

A1

TETLLVQNA

B*44:15

0.09

TETLLVQNA

B*44:03

5.85

 
  

KNWMTETLLVQNANPDCK

A1

KNWMTETLL

A*23:01

0.80

KNWMTETLL

A*23:01

25.75

 
 

19

FRDYVDRFFKTLRAEQA

A1

FRDYVDRFF

Cw*04:01

0.03

FRDYVDRFF

Cw*04:01

4.56

 
  

FRDYVDRFFKTLRAEQA

A1

FRDYVDRFF

A*23:01

0.60

FRDYVDRFF

A*23:01

4.56

 
  

FRDYVDRFFKTLRAEQA

A1

FRDYVDRFF

Cw*04:01

1.10

FRDYVDRFF

Cw*04:01

0.68

 
 

20

GATLEEMMTACQGVGGPGH

A1

EEMMTACQG

B*44:03

0.25

EEMMTACQG

B*44:03

0.97

 
 

21

LRALGPGATLEEMMTA

A1

RALGPGATL

B*15:10

1.80

RALGPGATL

B*44:01

0.56

 
  

LRALGPGATLEEMMTA

A1

RALGPGATL

Cw*04:01

0.60

RALGPGATL

Cw*04:01

0.56

 
 

22

FFKTLRAEQATQEVKNWM

A1

AEQATQEVK

B*44:03

0.15

AEQATQEVK

B*44:03

8.59

 
 

23

MEKEGKISKIGPENPY

A1

SKIGPENPY

B*15:03

0.50

SKIGPENPY

A*23:01

35.68

 
  

MEKEGKISKIGPENPY

A1

SKIGPENPY

B*15:10

0.50

SKIGPENPY

B*44:03

9.49

 
 

25

WVKVIEEKAFSPEVIPMF

A1

AFSPEVIPMF

A*23:01

0.40

AFSPEVIPM

A*23:01

5.95

 
  

WVKVIEEKAFSPEVIPMF

A1

WVKVIEEKA

A*23:01

1.70

WVKVIEEKA

A*23:01

17.53

 
  

WVKVIEEKAFSPEVIPMF

A1

EEKAFSPEV

B*44:03

0.80

EEKAFSPEV

B*44:03

3.38

 
  

WVKVIEEKAFSPEVIPMF

A1

EEKAFSPEV

B*44:15

0.03

   

EEKAFSPEV

  

WVKVIEEKAFSPEVIPMF

A1

FSPEVIPMF

Cw*04:01

0.50

FSPEVIPMF

Cw*04:01

1.63

FSPEVIPMF

  

WVKVIEEKAFSPEVIPMF

A1

FSPEVIPMF

Cw*16:01

0.50

FSPEVIPMF

A*23:01

0.46

 
  

WVKVIEEKAFSPEVIPMF

A1

KAFSPEVIP

Cw*16:01

1.20

KAFSPEVIP

B*4403

35.68

 
 

25

HQMKDCTERQANFLGKIW

A1

RQANFLGKI

B*4403

1.00

RQANFLGKI

B*4403

11.67

 
 

26

PMFSALSEGATPQDLNMM

A1

SEGATPQDL

B*44:03

0.80

SEGATPQDL

B*4403

0.33

 
 

27

HLARNCRAPRKKGCWK

A1

HLARNCRAP

A*74:01

0.60

HLARNCRAP

A*23:01

35.46

 
  

LVQNANPDCKSILRAL

A1

       
 

28

VATLYCVHQRIDVKDTK

A1

ATLYCVHQR

A*74:01

0.90

ATLYCVHQR

A*23:01

21.03

 
 

29

KIEEIQNKSKQKTQQAAA

A1

EIQNKSKQK

A*74:01

1.03

EIQNKSKQK

C*04:01

10.98

 
 

30

AGPIPPGQMREPRGSDIA

A1

AGPIPPGQM

B*15:10

0.60

AGPIPPGQM

C*04:01

2.02

 
  

SKQKTQQAAADTGNSSKV

A1

       

E913

A*02:01

31

LWQRPLVTIKIGGQLKEA

D

LWQRPLVTI

A*02:01

1.60

LWQRPLVTI

A*02:01

11.25

 

A*34:02

 

LWQRPLVTIKIGGQLKEA

D

QRPLVTIKI

Cw*06:02

0.70

QRPLVTIKI

Cw*06:02

16.29

 

B*45:01

 

LWQRPLVTIKIGGQLKEA

D

WQRPLVTIK

B*47:01

1.90

WQRPLVTIK

B*45:01

19.93

 

B*47:01

32

TVPVKLKPGMDGPKVKQW

A1

LKPGMDGPK

A*34:02

0.90

LKPGMDGPK

Cw*06:02

26.76

 

Cw*06:02

          

Cw*16:01

          

E914

A*01:01

33

DKWASLWNWFSITQWLWY

D

FSITQWLWY

A*01:01

0.06

FSITQWLWY

B*07:02

24.05

FSITQWLWY

A*02:01

 

DKWASLWNWFSITQWLWY

D

KWASLWNWF

Cw*04:07

1.20

    

B*07:02

 

DKWASLWNWFSITQWLWY

D

SLWNWFSIT

A*02:01

1.66

    

B*44:15

34

PVDPDEVEKATEGENNSL

A1

ATEGENNSL

A*01:01

1.74

    

Cw*04:07

          

Cw*07:02

          

L91

A*02:01

35

EQMHTDIISLWDQSLK

A1

IISLWDQSLK

A*03:01

1.90

IISLWDQSL

A*03:01

20.55

ISLWDQSLK

A*03:01

 

EQMHTDIISLWDQSLK

A1

MHTDIISLW

B*58:02

0.90

MHTDIISLW

A*03:01

23.95

 

B*53:01

 

EQMHTDIISLWDQSLK

A1

MHTDIISLW

Cw*06:02

1.30

MHTDIISLW

Cw*06:02

3.72

 

B*58:02

 

EQMHTDIISLWDQSLK

A1

QMHTDIISL

A*02:01

1.90

    

Cw*04:01

 

EQMHTDIISLWDQSLK

A1

QMHTDIISL

B*5301

1.20

QMHTDIISL

B*5301

18.52

 

Cw*06:02

36

LETSEGCKQIIGQLQPAI

D

ILAQLQPAI

A*02:01

0.40

    
 

37

SGGKLDAWEKIRLRPGGK

A1

KIRLRPGGK

A*03:01

0.25

KIRLRPGGK

A*03:01

0.06

KIRLRPGGK

 

38

LETTEGCQQIMEQLQPAL

A1

IMEQLQPAL

A*03:01

0.40

IMEQLQPAL

A*03:01

21.06

 
  

LETTEGCQQIMEQLQPAL

A1

IMEQLQPAL

Cw*04:01

0.80

IMEQLQPAL

Cw*04:01

0.19

 
  

LETTEGCQQIMEQLQPAL

A1

QIMEQLQPA

A*02:01

0.70

    
 

39

ERILSTCLGRSAEPVPL

A1

RSAEPVPL

B*58:02

0.12

    
  

ERILSTCLGRSAEPVPL

A1

RILSTCLGR

A*03:01

0.90

RILSTCLGR

A*03:01

0.11

 
  

ERILSTCLGRSAEPVPL

A1

CLGRSAEPV

A*02:01

2.00

    
 

40

LVGPTPVNIIGRNMLTQI

A1

LVGPTPVNI

A*02:01

1.61

LVGPTPVNI

:01

4.69

 
 

41

CKQIIGQLQPAIQTGSEEL

D

QIIGQLQPA

A*02:01

1.80

    
  

CKQIIGQLQPAIQTGSEEL

D

AIQTGSEEL

A*03:01

1.50

AIQTGSEEL

A*03:01

21.04

 
  

CKQIIGQLQPAIQTGSEEL

D

IIGQLQPAI

A*03:01

1.10

    
 

42

PAIQTGSEELRSLYNTVA

D

AIQTGSEEL

A*03:01

1.50

AIQTGSEEL

Cw*06:02

3.74

 
  

PAIQTGSEELRSLYNTVA

D

LRSLYNTVA

Cw*06:02

0.70

LRSLYNTVA

Cw*06:02

5.48

 

L92

A*02:01

43

NDIQKLVGKLNWASQIYP

D

KLNWASQIY

A*30:02

0.50

KLNWASQIY

A*30:02

5.48

KLNWASQIY

A*30:02

 

NDIQKLVGKLNWASQIYP

D

KLVGKLNWA

A*02:01

0.60

KLVGKLNWA

A*02:01

1.22

 

B*44:03

 

NDIQKLVGKLNWASQIYP

D

KLNWASQIY

A*02:01

0.90

KLNWASQIY

A*02:01

11.10

 

B*14:02

 

NDIQKLVGKLNWASQIYP

D

KLNWASQIY

Cw*04:01

1.80

KLNWASQIY

Cw*04:01

13.24

 

Cw*04:01

44

LVVKTYWGLHTGEREWHL

D

LVVKTYWGL

A*02:01

1.70

LVVKTYWGL

A*02:01

0.95

 

Cw*08:02

 

LVVKTYWGLHTGEREWHL

D

VVKTYWGLH

A*30:02

1.50

    
 

45

SLVNRVRQGYSPLSFQTL

D

NRVRQGYSPL

B*14:02

0.12

    
  

SLVNRVRQGYSPLSFQTL

D

YSPLSFQTL

Cw*04:01

0.70

YSPLSFQTL

Cw*04:01

2.47

 
  

SLVNRVRQGYSPLSFQTL

D

RQGYSPLSF

A*30:02

1.20

RQGYSPLSF

A*30:02

4.51

RQGYSPLSF

  

SLVNRVRQGYSPLSFQTL

D

RQGYSPLSF

Cw*04:01

1.40

RQGYSPLSF

Cw*04:01

3.12

 
 

46

TLPCRIKQIINMWQGV

D

CRIKQIINM

A*02:02

0.40

CRIKQIINM

A*30:02

28.36

CRIKQIINM

 

47

MRVRGIQRNYQHLWRW

D

RNYQHLWRW

B*44:03

0.40

RNYQHLWRW

B*44:03

3.17

 
 

48

GEMKNCSFNITTEIRDKK

D

EMKNCSFNI

B*44:03

0.30

EMKNCSFNI

B*44:03

32.11

 
 

49

NVTENFNMWKNNMVEQMH

D

NFNMWKNNM

Cw*04:01

1.06

NFNMWKNNM

Cw*04:02

4.53

 
  

NVTENFNMWKNNMVEQMH

D

TENFNMWKNNM

B*44:03

1.81

TENFNMWKN

B*44:03

7.71

 
 

50

WLIDRIRERAEDSGNESE

D

WLIDRIRER

A*02:01

2.00

WLIDRIRER

A*02:01

4.68

 

L94

A*3402

51

LIHLHYFDCFSDSAIRKA

A1

YFDCFSDSA

Cw*04:01

0.90

YFDCFSDSA

Cw*04:01

2.52

 

A*7401

 

LIHLHYFDCFSDSAIRKA

A1

YFDCFSDSA

Cw*06:02

1.60

YFDCFSDSA

Cw*06:02

14.91

 

B*4403

 

LIHLHYFDCFSDSAIRKA

A1

HLHYFDCFSDSAIR

A*7401

1.40

    

B*5802

 

LIHLHYFDCFSDSAIRKA

A1

FSDSAIRKA

Cw*04:01

1.10

FSDSAIRKA

Cw*04:01

0.78

 

Cw*0401

52

HLARNCRAPRKKGCWK

A1

ARNCRAPRK

A*3402

1.10

    

Cw*0602

 

HLARNCRAPRKKGCWK

A1

HLARNCRAP

A*3402

1.50

    
  

HLARNCRAPRKKGCWK

A1

HLARNCRAP

A*74:01

0.60

    
 

53

SKQKTQQAAADTGNSSKV

A1

AADTGNSSK

A*3402

1.15

    
 

54

HQDPIPKQPSSQPRGD

D

HQDPIPKQP

Cw*04:01

0.60

HQDPIPKQP

Cw*04:01

7.89

 

L95

A*23:01

55

KRWIILGLNKIVRMYSPV

A1

WIILGLNKI

A*23:01

0.60

WIILGLNKI

A*23:01

6.99

 

A*74:01

 

KRWIILGLNKIVRMYSPV

A1

IILGLNKIV

A*74:01

0.60

IILGLNKIV

Cw*04:01

2.81

 

B*44:03

56

NMMLNIVGGHQAAMQMLK

A1

GHQAAMQML

B*15:10

0.40

    

B*15:10

 

NMMLNIVGGHQAAMQMLK

A1

HQAAMQMLK

A*74:01

0.90

   

HQAAMQMLK

Cw*04:01

 

NMMLNIVGGHQAAMQMLK

A1

HQAAMQMLK

Cw*04:01

1.30

HQAAMQMLK

Cw*04:01

26.63

 

Cw*16:01

57

EVNIVTDSQYALGIIQA

A1

EVNIVTDSQ

B*44:03

0.50

EVNIVTDSQ

B*44:03

19.78

 
 

58

AYETEMHNVWATHACV

A1

TEMHNVWAT

B*44:03

0.40

TEMHNVWAT

B*44:03

0.88

YETEMHNVW

  

AYETEMHNVWATHACV

A1

MHNVWATHA

B*15:10

0.90

MHNVWATHA

Cw*04:01

11.32

 
  

AYETEMHNVWATHACV

A1

MHNVWATHA

B*44:03

0.90

MHNVWATHA

B*44:04

22.06

 
 

59

AAEWDRLHPVHAGPI

A1

AAEWDRLHP

B*44:03

0.50

AAEWDRLHP

B*44:03

34.74

AEWDRLHPV

  

AAEWDRLHPVHAGPI

A1

LHPVHAGPI

B*15:10

0.15

AAEWDRLHP

A*23:01

34.79

 
  

AAEWDRLHPVHAGPI

A1

RLHPVHAGP

A*74:01

1.50

AAEWDRLHP

Cw*04:01

6.59

 
 

60

LRALGPGATLEEMMTA

A1

RALGPGATL

B*15:10

0.60

RALGPGATL

A*23:01

8.98

 
  

LRALGPGATLEEMMTA

A1

RALGPGATL

Cw*04:01

0.60

RALGPGATL

Cw*04:01

0.56

 
 

61

FFKTLRAEQATQEVKNWM

A1

AEQATQEVK

B*44:03

0.15

AEQATQEVK

B*44:03

8.59

 
 

62

GTTSTPQEQIGWMTGNPPI

A1

QEQIGWMTG

B*44:15

0.65

QEQIGWMTG

B*44:03

1.85

 
  

GTTSTPQEQIGWMTGNPPI

A1

GWMTGNPPI

A*23:01

1.40

GWMTGNPPI

A*23:01

0.75

 
 

63

WVKVIEEKAFSPEVIPMF

A1

EEKAFSPEV

B*44:15

0.62

    
  

WVKVIEEKAFSPEVIPMF

A1

EEKAFSPEV

B*44:03

0.80

EEKAFSPEV

B*44:03

3.38

EEKAFSPEV

  

WVKVIEEKAFSPEVIPMF

A1

WVKVIEEKA

A*23:01

1.70

WVKVIEEKA

A*23:01

34.76

 
  

WVKVIEEKAFSPEVIPMF

A1

FSPEVIPMF

Cw*04:01

0.50

FSPEVIPMF

Cw*04:01

1.63

 
  

WVKVIEEKAFSPEVIPMF

A1

AFSPEVIPM

Cw*16:01

0.70

AFSPEVIPM

Cw*04:01

0.28

 
  

WVKVIEEKAFSPEVIPMF

A1

KAFSPEVIP

Cw*16:01

1.20

KAFSPEVIP

Cw*04:01

7.47

 
 

64

TVYYGVPVWKDAETTLF

A1

TVYYGVPVW

A*74:01

0.17

TVYYGVPVW

B*44:03

7.96

VYYGVPVWK

  

TVYYGVPVWKDAETTLF

A1

TVYYGVPVW

Cw*16:01

1.10

TVYYGVPVW

Cw*04:01

1.25

 
  

TVYYGVPVWKDAETTLF

A1

WKDAETTLF

B*15:10

0.90

    
  

TVYYGVPVWKDAETTLF

A1

VWKDAETTL

A*23:01

0.60

WKDAETTLF

A*23:01

4.36

 
  

TVYYGVPVWKDAETTLF

A1

VWKDAETTL

Cw*04:01

0.60

VWKDAETTL

Cw*04:01

1.97

 
 

65

LRWGTMILGMIIICSAA

A1

RWGTMILGM

A*23:01

0.90

RWGTMILGM

A*23:01

3.97

 
  

LRWGTMILGMIIICSAA

A1

RWGTMILGM

Cw*04:01

0.94

RWGTMILGM

Cw*04:01

1.34

 
 

66

GHQAAMQMLKDTINEEAA

A1

HQAAMQMLK

A*74:01

0.90

HQAAMQMLK

A*23:01

32.48

 
 

67

IKQGPKEPFRDYVDRFFK

A1

FRDYVDRFF

A*23:01

0.60

FRDYVDRFF

A*23:01

10.14

 
  

IKQGPKEPFRDYVDRFFK

A1

FRDYVDRFF

Cw*04:01

0.60

FRDYVDRFF

Cw*04:01

0.68

 
 

68

FRDYVDRFFKTLRAEQA

A1

FRDYVDRFF

A*23:01

0.60

FRDYVDRFF

A*23:01

10.14

 
  

LVQNANPDCKSILRAL

A1

       
 

69

MREPRGSDIAGTTSTPQEQI

A1

MREPRGSDI

B*15:10

2.00

MREPRGSDI

Cw*04:01

1.95

 
 

70

EKIRLRPGGKKKYRLKHL

A1

RLRPGGKKK

A*74:01

0.28

RLRPGGKKK

A*23:01

28.99

 
 

71

VATLYCVHQRIDVKDTK

A1

ATLYCVHQR

A*74:01

0.90

ATLYCVHQR

B*44:03

28.12

 
 

72

LFCASDAKAYETEMHNVW

A1

SDAKAYETEMHNVW

B*44:03

0.31

KAYETEMHN

B*44:03

35.92

 

L913

A*02:01

73

PPLVKLWYQLEKEPIIGA

D

LVKLWYQLE

A*34:01

0.50

LVKLWYQLE

A*02:01

18.93

 

A*34:02

 

PPLVKLWYQLEKEPIIGA

D

KLWYQLEKEPIIGA

A*02:01

1.47

WYQLEKEPI

A*02:01

18.24

 

B*45:01

 

PPLVKLWYQLEKEPIIGA

D

QLEKEPIIG

B*45:01

0.90

QLEKEPIIG

B*45:01

17.25

 

B*47:01

 

PPLVKLWYQLEKEPIIGA

D

YQLEKEPII

A*02:01

0.80

YQLEKEPII

A*02:01

0.25

 

Cw*06:02

 

PPLVKLWYQLEKEPIIGA

D

YQLEKEPII

B*47:01

1.20

YQLEKEPII

Cw*06:02

2.05

 

Cw*16:01

74

KWKPKMIGGIGGFIKVR

D

MIGGIGGFIK

A*34:02

0.20

    
  

KWKPKMIGGIGGFIKVR

D

KMIGGIGGF

A*02:01

1.00

KMIGGIGGF

A*02:01

1.55

 
  

KWKPKMIGGIGGFIKVR

D

KMIGGIGGF

B*47:01

1.10

KMIGGIGGF

Cw*06:02

5.37

 
 

75

VIWGKTPKFRLPIQKETW

D

IVIWGKTPK

A*34:02

0.15

    
  

VIWGKTPKFRLPIQKETW

D

KTPKFRLPI

Cw*16:01

1.10

KTPKFRLPI

A*02:01

4.43

 
  

VIWGKTPKFRLPIQKETW

D

VIWGKTPKF

A*34:02

1.00

VIWGKTPKF

Cw*06:02

7.82

 
 

76

RQANFLGKIWPSHKGR

D

RQANFLGKI

B*47:01

0.40

    
  

RQANFLGKIWPSHKGR

D

RQANFLGKI

Cw*06:02

2.00

RQANFLGKI

Cw*06:02

9.23

 
  

RQANFLGKIWPSHKGR

D

FLGKIWPSH

A*34:02

1.10

RQANFLGKI

B*45:01

7.03

 
 

77

KIEELREHLLRWGFTTPDK

D

REHLLRWGF

B*47:01

0.03

REHLLRWGF

A*02:01

20.74

 
  

KIEELREHLLRWGFTTPDK

D

REHLLRWGF

B*45:01

0.70

REHLLRWGF

B*45:01

1.11

 
  

KIEELREHLLRWGFTTPDK

D

LREHLLRWG

Cw*06:02

1.40

LREHLLRWG

Cw*06:02

19.44

 
  

KIEELREHLLRWGFTTPDK

D

HLLRWGFTT

A*02:01

1.20

HLLRWGFTT

A*02:01

0.20

 
 

78

GFAILKCKDKEFNGTGPCK

A1

KEFNGTGPC

B*45:01

1.50

KEFNGTGPC

B*45:01

1.25

 
 

79

AILNIPTRIRQGLERALL

D

IRQGLERAL

Cw*06:02

0.60

IRQGLERAL

Cw*06:02

0.71

 
  

AILNIPTRIRQGLERALL

D

AILNIPTRI

A*02:01

0.60

    
  

AILNIPTRIRQGLERALL

D

RQGLERALL

B*47:01

1.70

RQGLERALL

B*45:01

13.50

 
 

80

QKTELQAINLALQDSGLEV

D

LALQDSGLE

A*02:01

1.50

LALQDSGLE

A*02:01

22.65

 
  

QKTELQAINLALQDSGLEV

D

TELQAINLA

B*47:01

0.60

TELQAINLA

B*45:01

0.15

 
  

QKTELQAINLALQDSGLEV

D

QKTELQAIN

B*45:01

1.00

QKTELQAIN

B*45:01

12.04

 
  

QKTELQAINLALQDSGLEV

D

NLALQDSGL

A*34:02

1.50

NLALQDSGL

A*02:01

4.72

 
 

81

IIGRNLLTQIGCTLNFPI

D

IGCTLNFPI

A*02:01

0.90

IGCTLNFPI

A*02:01

4.79

 
  

IIGRNLLTQIGCTLNFPI

D

NLLTQIGCTLNFPI

A*02:01

1.63

    
  

IIGRNLLTQIGCTLNFPI

D

LLTQIGCTL

A*02:01

1.90

LLTQIGCTL

A*02:01

0.53

 
  

IIGRNLLTQIGCTLNFPI

D

TQIGCTLNF

Cw*16:01

1.40

TQIGCTLNF

Cw*06:02

2.26

 
  

IIGRNLLTQIGCTLNFPI

D

LLTQIGCTL

Cw*16:01

0.90

    
 

82

KWKPKMIGGIGGFIKVR

D

KMIGGIGGF

A*02:01

1.00

KMIGGIGGF

A*02:01

1.55

 
 

83

LWQRPLVTIKIGGQLKEA

D

LWQRPLVTI

A*02:01

1.60

LWQRPLVTI

A*02:01

11.25

 
  

LWQRPLVTIKIGGQLKEA

D

QRPLVTIKI

Cw*06:02

0.70

LWQRPLVTI

Cw*06:02

0.74

 
 

84

LKEALLDTGADDTVLEEI

D

LKEALLDTG

B*45:01

1.20

LKEALLDTG

B*45:01

12.15

 
 

85

KRQEILDLWVYHTQGYF

A1

QEILDLWVY

B*45:01

1.70

QEILDLWVY

B*45:01

1.02

 
  

KRQEILDLWVYHTQGYF

A1

QEILDLWVY

B*47:01

0.90

    
  

KRQEILDLWVYHTQGYF

A1

RQEILDLWV

Cw*06:02

1.10

RQEILDLWV

Cw*06:02

21.81

 
  

KRQEILDLWVYHTQGYF

A1

ILDLWVYHT

A*02:01

0.70

ILDLWVYHT

B*45:01

13.80

 
  

IYSLIEESQNQQEKNEQEL

D

       

L914

A*01:01

86

SFNCGGEFFYCNTSGLF

A1

SFNCGGEFFY

A*01:01

0.25

    

A*02:01

 

SFNCGGEFFYCNTSGLF

A1

SFNCGGEFF

Cw*04:07

1.30

SFNCGGEFF

B*44:03

7.72

 

B*07:02

 

SFNCGGEFFYCNTSGLF

A1

SFNCGGEFF

Cw*07:02

1.10

SFNCGGEFF

B*07:02

22.45

 

B*44:03

 

SFNCGGEFFYCNTSGLF

A1

GEFFYCNTS

B*44:03

1.30

GEFFYCNTS

B*44:03

1.80

 

Cw*04:07

87

MEKEGKISKIGPENPY

A1

KEGKISKIGPENPY

B*44:03

1.30

KISKIGPEN

B*44:03

39.08

 

Cw*07:02

 

MEKEGKISKIGPENPY

A1

ISKIGPENP

A*01:01

1.80

ISKIGPENP

B*07:02

27.27

 
 

88

ARKNRRRRWRARQRQI

A1

RRWRARQRQ

Cw*07:02

0.60

RRWRARQRQ

Cw*07:02

19.17

 
  1. Experimentally mapped peptides for all participants and their cognate computational core 9-mer and a single 14-mer epitope sequence with scores. Peptides shown in italic text were not algorithmically predicted as binders. Multiple computational predictions contained in a single experimental peptide were counted as a single hit. Participant’s identifiers (ID) beginning with E or L represent early or late time sampling points respectively