Computational MHC-I epitope predictor identifies 95% of experimentally mapped HIV-1 clade A and D epitopes in a Ugandan cohort

Table 3 Peptides not predicted

Participant’s Identification	Participant’s HLA Alleles	Experimental Peptide Sequence
E92	A*02:01	FKGPRKIIKCFNCGKEGHI
	A*30:02
	B*44:03
	B*14:02
	Cw*04:01
	Cw*08:02
E95	A*23:01	LVQNANPDCKSILRAL (both time points)
	A*74:01	SKQKTQQAAADTGNSSKV
	B*44:03
	B*15:10
	Cw*04:01
	Cw*16:01
L913	A*02:01	IYSLIEESQNQQEKNEQEL
	A*34:02
	B*45:01
	B*47:01
	Cw*06:02
	Cw*16:01

Experimentally mapped peptides that were not predicted by NetMHCpan4.0 as binders. Participant’s identifiers beginning with E or L represent early or late time sampling points respectively

ISSN: 1471-2334