Use of hemagglutinin and neuraminidase amplicon-based high-throughput sequencing with variant analysis to detect co-infection and resolve identical consensus sequences of seasonal influenza in a university setting

Table 2 BLASTn results for our three samples that contained both influenza A and B sequences

S/N	Lab-ID	HA			NA
S/N	Lab-ID	Most Similar Strain in GenBank (Accession No./date-of-collection)	Similarity (%)	Lineage	Most Similar Strain in GenBank (Accession No./date-of-collection)	Similarity (%)	Lineage
2	01212020–002	A/Washington/10/2020 (MT168520/01012020)	100	A (H1N1)pdm09	A/Washington/10/2020 (MT168522/01012020)	100	A(H1N1)pdm09
2	01212020–002	B/Arizona/26/2019 (MN949149/11022019)	100	B/Victoria	B/Kenya/11/2019 (MN086301/04162019)	99.61	B/Victoria
18	01232020–006	A/Washington/10/2020 (MT168520/01012020)	100	A (H1N1)pdm09	A/Washington/10/2020 (MT168522/01012020)	100	A(H1N1)pdm09
18	01232020–006	B/Arizona/26/2019 (MN949149/11022019)	100	B/Victoria	B/Kenya/11/2019 (MN086301/04162019)	99.61	B/Victoria
24	01242020–006	A/Washington/10/2020 (MT168520/01012020)	100	A (H1N1)pdm09	A/Washington/10/2020 (MT168522/01012020)	100	A(H1N1)pdm09
24	01242020–006	B/Arizona/26/2019 (MN949149/11022019)	100	B/Victoria	B/Kenya/11/2019 (MN086301/04162019)	99.61	B/Victoria

ISSN: 1471-2334