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Table 2. Microorganism detected by mNGS of 5 patients

From: Metagenomic next-generation sequencing for the early diagnosis of talaromycosis in HIV-uninfected patients: five cases report

Patient Microorganism detected by mNGS Pathogenic microorganism except Talaromyces marneffei
bacteria reads fungi reads virus reads others reads
P1 Staphylococcus aureus 8 Talaromyces marneffei 6 Human-betaherpesvirus-5 18 - - Staphylococcus aureus
P2 Talaromyces marneffei 414 Human-betaherpesvirus-5 6
Human-gamma herpesvirus-4 2
P3
P4 Pneumocystis–jirovecii 7
P5 Veillonella parvula 190 Talaromyces marneffei 9 Human gammaherpesvirus 4 2
Veillonella atypica 149
Streptococcusparasanguinis 94
Streptococcus australis 13
Rothia aeria 55
Rothia mucilaginosa 46 Torque teno virus 2
Prevotella salivae 39
Prevotellamelaninogenica 28
Lautropia mirabilis 87
Lactobacillus salivarius 37