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Table 2 Primers used for amplification and sequencing of the gB gene

From: Stability of glycoprotein gene sequences of herpes simplex virus type 2 from primary to recurrent human infection, and diversity of the sequences among patients attending an STD clinic

Nucleotide position

Type

Sequence

53254–53273

AS

5′-CCGTTAGCACATGTCTGCAT

53437–53456

S

5′-AGGTACTCTCCGCTCCACAA

53522–53541

AS

5′-TCTTTCTGGCCTTGTGTTCC

53710–53739

S

5′-CTACGTCCTGCAACTGCAAC

53801–53820

AS

5′-CGAAGGGGTTGGACATAAAG

54013–54032

S

5′-CTGCTGGACTACACGGAGGT

54108–54128

AS

5′-AGGTCGATGAAGGTGCTGAC

54299–54319

S

5′-GCTTTCGGTACGAAGACCAG

54371–54390

AS

5′-AGTTCTGCACGATCACGTTG

54510–54529

S

5′-ACCACGAGCTGACTCTCTGG

54730–54749

AS

5′-TACTCCCGCACGTACAGCTC

54943–54962

S

5′-ATCTCGACCACCTTCACCAC

55027–55046

AS

5′-CACTTGGTCATGGTGCAGAC

55232–55252

S

5′-TTGTGTACATGTCCCCGTTTT

55372–55391

AS

5′-TACTTGAGGTCGGTGGTGTG

55481–55500

S

5′-CAAGTACGTGCGGAACAACA

55643–55662

S

5′-CAAATTCAAGGCCACCATGT

55648–55667

AS

5′-GTGGCCTTGAATTTGTACGG

55914–55923

AS

5′-CTTTTTGGTTTTCCGCTTCC

55914–55923

S

5′-GGAAGCGGAAAACCAAAAAG

56176–56195

S

5′-CCATCCTCTACTCGGTCCTG

  1. Nucleotide positions are given for the reference strain HG52, GenBank accession number Z 86099.2. Boldface indicates primers used for amplification, the rest were used for sequencing. S: sense. AS: antisense.