Clinical, molecular and drug sensitivity pattern of mycobacterial isolates from extra-pulmonary tuberculosis cases in Addis Ababa, Ethiopia

Korma, Workneh; Mihret, Adane; Hussien, Jemal; Anthony, Richard; Lakew, Mekuria; Aseffa, Abraham

doi:10.1186/s12879-015-1177-4

Table 4 Spoligo patterns and family assignment of Extra-pulmonary tuberculosis isolates

From: Clinical, molecular and drug sensitivity pattern of mycobacterial isolates from extra-pulmonary tuberculosis cases in Addis Ababa, Ethiopia

No.	Spoligotype octal/binary format	Shared type number	Lineage using conformal Bayesian network (rules model)	sub lineage on SpolDB4	Spotclust ID based on SpolDB3 model	Spotclust probability	No.of isolates	%
1	111111111113771	1	East Asian (Beijing)	Beijing/W lineage	Beijing family		1	1.69
2	111111117761771	4	East-Asian	LAM3			1	1.69
3	700000007177771	910	Indo-Oceanic	U	Family 36		3	5.08
4	777000377760771	149	Euro-American	T3			6	10.1
5	777777777760771	53	Euro-American	T1			12	20.3
6	777777777720771	50	Euro-American	H3			1	1.69
7	777777777760751	612	Euro-American	T1			1	1.69
8	777775777760731	584	Euro-American	T1			1	1.69
9	777737777760771	37	Euro-American	T1			4	6.77
10	577777607760771	866	Euro-American	LAM9			1	1.69
11	777777777420771	777	Euro-American	H3			1	1.69
12	777777754020771	883	Euro-American	H1			1	1.69
13	777777774020771	47	Euro-American	H1			1	1.69
14	777737770000000	56	Euro-American	U	Family34/ EAI1/	0.99	1	1.69
15	703777740003171	25	East-African Indian (CAS)	CAS			5	8.47
16	703377400001771	21	East-African Indian (CAS)	CAS			3	5.08
17	777777377760771	40	Euro-American	T4			1	1.69
18	777737777420771	35	Euro-American	H4			1	1.69
19	603777740003771	952	East-African Indian (CAS)	CAS			1	1.69
20	577777002060771	788	Euro-American	T1			1	1.69
21	007777707760771	1889	Euro-American	U	LAM9	0.688	1	1.69
22	776737777760771	New	Euro-American		T1	0.99	2	3.39
23	777317347760671	New	Euro-American		T1	0.99	1	1.69
24	777777747420771	New	Euro-American		H3	0.77	1	1.69
25	377000377760771	New	Euro-American		T3	0.99	1	1.69
26	777737747760760	New	Euro-American		T1	0.99	1	1.69
27	703777600003171	New	East-African Indian (CAS)		CAS	0.99	1	1.69
28	703701740003171	New	East-African Indian (CAS)		EAI4	0.933	1	1.69
29	006737777760771	New	Euro-American		T1	0.99	1	1.69
30	511000377760771	New	Euro-American		T3	0.99	1	1.69
31	602343761000200	New	M. bovis				1	1.69
							59	100 %

CAS (Central Asian Strain), EAI (East African Indian), H (Haralem), LAM (Latin American), T (ill defined)

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ISSN: 1471-2334

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