Fig. 5
From: Chikungunya virus infection in Indonesia: a systematic review and evolutionary analysis
The maximum clade credibility (MCC) tree of Indonesian Chikungunya virus. The tree was generated using the Bayesian Markov chain Monte Carlo (MCMC) method as implemented in BEAST using General Time Reversible (GTR) evolution model from E1 sequences. In the analysis, 127 Indonesian chikungunya viruses and 53 representative reference sequences from GenBank were included. All Indonesian Chikungunya viruses, isolated locally (red front) or isolated in neighboring countries (blue front) are grouped into Asian and East/Central/South African (ECSA) genotype