Table 2 Concordance for HCV genotype and subtype determination with the different genotyping assays – VERSANT LiPA assay as reference
Genotype | Concordance percentage: VERSANT LiPA assay vs | ||
|---|---|---|---|
5’UTR sequencing (n) | Core sequencing (n) | NS5B sequencing (n) | |
G1 | 100% (15/15) | 94% (15/16) | 92% (12/13) |
G1a | 40% (2/5) | 75% (3/4) | 100% (3/3) |
G1b | 70% (7/10) | 100% (12/12) | 90% (9/10) |
G2 | 100% (5/5) | 100% (5/5) | 100% (6/6) |
G3 | 100% (7/7) | 86% (6/7) | 100% (7/7) |
G4 | 91% (10/11) | 100% (10/10) | 100% (8/8) |
G6 | 60% (3/5) | 100% (8/8) | 100% (3/3) |
G1 or 6 | 100% (6/6) | 100% (7/7) | 100% (5/5) |