Fig. 3

Phylogenetic trees of MRSA used in this study. a Pan-genome based neighbor-joining tree of all the MRSA. ST6-t701, clustering brown; ST59-t437, clustering green; ST239-t030, clustering blue; ST188-t189, clustering yellow; ST965-t062 and ST5-t14723, clustering gray. b SNP based neighbor-joining tree of all the MRSA. ST6-t701, clustering brown; ST59-t437, clustering green; ST239-t030, clustering blue; ST188-t189, clustering yellow; ST965-t062 and ST5-t14723, clustering gray. c Pan-genome based neighbor-joining tree of 84 MRSA, containing 60 strains in this study and 24 references. ST6-t701, clustering brown; ST59-t437, clustering green; ST239-t030, clustering blue; ST188-t189, clustering yellow; ST965-t062 and ST5-t14723, clustering gray. The reference strains were shown with red font