|  | Pharynx | Rectum | Urine | |||
---|---|---|---|---|---|---|---|
 | n | Sensitivity (%) | Specificity (%) | Sensitivity (%) | Specificity (%) | Sensitivity (%) | Specificity (%) |
4001—Italy | 299 | 100 (47.82–100) | 100 (98.75–100) | 100 (82.35–100) | 98.53 (96.28–99.60) | 83.33 (35.88–99.58) | 98.98 (97.04–99.79) |
4005—Malta | 742 | 57.89 (33.50–79.75) | 99.86 (99.22–100) | 74.42 (63.87–83.22) | 99.22 (98.20–99.75) | 96.15 (80.36–99.90) | 99.85 (99.19–100) |
4006—Peru1 | 267 | 81.82 (48.22–97.72) | 100 (98.56–100) | 78.13 (60.03–90.72) | 99.10 (96.77–99.89) | 75.00 (47.62–92.73) | 99.60 (97.79–99.99) |
4007—Peru2 | 394 | 40.00 (12.16–73.76) | 99.74 (98.54–99.99) | 76.00 (61.83–86.94) | 99.71 (98.38–99.99) | 66.67 (22.28–95.67) | 99.74 (98.56–99.99) |
Fixed effects model | 64.44 (46.92–78.80) | 99.88 (99.38–99.98) | 78.07 (70.32–84.26) | 99.19 (98.43–99.58) | 85.19 (70.39–93.29) | 99.63 (99.05–99.85) | |
Random effects model | 67.79 (42.92–85.49) | 99.88 (99.51–99.97) | 78.07 (71.57–83.44) | 99.19 (98.58–99.54) | 84.82 (67.76–93.69) | 99.63 (99.14–99.84) | |
 |  | Between sites variability—SD (p-value) | Between sites variability—SD (p-value) | Between sites variability—SD (p-value) | |||
 |  | 7.74 (0.64) | - | - | - | 7.61 (0.60) | 7.14 (0.94) |
 |  | DOR | 1720.83 (305.54–9691.86) | DOR | 435.33 (223.61–847.51) | DOR | 1500.57 (412.30–5461.33) |
 |  | LR +  | 554.89 (133.34–2309.09) | LR +  | 96.23 (54.46–170.03) | LR +  | 228.68 (97.31–537.39) |
 |  | LR- | 0.32 (0.16–0.65) | LR- | 0.22 (0.17–0.29) | LR- | 0.15 (0.07–0.35) |